Quick Overview: Video recorded during the virtual Bioinfoskills for Microbial Genomics workshop - 02 Feb 2022. Harshil Patel () presents a Pipeline Code Structure walk through for the new A demo of how we can share pipelines using: GitHub to host the code and the configuration Docker (or Singularity, or even ...

08 Working With Nextflow Dsl2 - Detailed Overview & Context

Video recorded during the virtual Bioinfoskills for Microbial Genomics workshop - 02 Feb 2022. Harshil Patel () presents a Pipeline Code Structure walk through for the new A demo of how we can share pipelines using: GitHub to host the code and the configuration Docker (or Singularity, or even ... Teaching(Video Conferencing): Consultation(Video Conferencing): ... Efficient processing of biological data requires tools and workflows that can analyse large datasets in a reproducible, portable, ... Paolo Di Tommaso talks about the future development of Nextlfow at

Most bioinformatics roles dealing with large volumes of data will require you to wrap your processing steps (a pipeline!) In this video, we explore a catalog of best-practice bioinformatic pipelines written in Lorena Pantano, Lead Bioinformatics Manager, DFCI The Ghobrial Lab generates hundreds of single-cell RNA-seq, spatial ... Sateesh Peri is giving an overview of tools and resources that help with learning Nextflow. Here is a link to the talk ...

Photo Gallery

08 Working with Nextflow DSL2 modules and Bactopia | Robert Petit
Introduction to DSL2 in Nextflow - Evan Floden & Paolo Di Tommaso
DSL2 in nf-core - Phil Ewels & Harshil Patel
DSL2: Pipeline Structure Walkthrough - Harshil Patel
[Nextflow DSL2] Running a remote pipeline using Docker
Nextflow Tutorial |  How NextFlow works
How to use Nextflow in HPC
An introduction to Nextflow
What's new in Nextflow: DSL-2 and beyond - Paolo Di Tommaso
introduction to workflow managers for pipelines & getting started with nextflow in bioinformatics
Nextflow Tutorial #4: Exploring nf-core pipelines
A Lab-Scale Pipeline Factory: Using AI Agents and Skills to Accelerate Nextflow Development
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